Fast genetic mapping in barley: case studies of cuticle mutants using RNA-sequencing     

XiaoFeng Li  Chao Li  Qin Zhou  GuoXiong Chen  PengShan Zhao 《寒旱区科学》2020,12(3):180-188

Barley(Hordeum vulgare L.) is one of the earliest domesticated crop species and ranked as the fourth largest cereal production worldwide. Forward genetic studies in barley have greatly advanced plant genetics during the last century; however, most genes are identified by the conventional mapping method. Array genotyping and exome-capture sequencing have also been successfully used to target the causal mutation in barley populations, but these techniques are not widely adopted because of associated costs and partly due to the huge genome size of barley. This review summarizes three mapping cases of barley cuticle mutants in our laboratory with the help of RNA-sequencing. The causal mutations have been successfully identified for two of them and the target genes are located in the pericentromeric regions. Detailed information on the mapping-by-sequencing, mapping-and-sequencing, and RNA-sequencing assisted linkage mapping are presented and some limitations and challenges on the mapping assisted by RNA sequencing are also discussed. The alternative and elegant methods presented in this review may greatly accelerate forward genetics of barley mapping, especially for laboratories without large funding.  相似文献   

气候变化下基于物种与植物耦联机制的小白额雁(Anser erythropus)潜在生境及适宜性研究--以长江流域中下游为例     

向伶  高翔  彭玉辉  梁婕 《资源与生态学报(英文版)》2020,11(2):140-149

气候变化和人类活动通过改变物种生境而影响物种多样性。小白额雁是长江流域中下游的一种具有较高生态价值的食草型濒危候鸟,受气候变化和人类活动威胁。本文以小白额雁为代表性物种,定量分析了气候变化对长江流域中下游候鸟潜在生境及适宜性空间分布格局的影响。采用Maxent模型模拟了当前情景和全球环流模型(GCMs)气候场景下小白额雁潜在生境及其适宜性分布。研究结果表明,小白额雁分布特征与其栖息地周边植物分布呈显著相关关系;运用Maxent模型模拟小白额雁六种主要食源植物的分布特征,并将其结果作为环境变量,将显著改善小白额雁潜在生境及其适宜性模型的模拟性能;在两种典型浓度情景(RCP 2.6和RCP8.5)下,2070年小白额雁潜在生境适宜性面积将下降。为应对气候变化对小白额雁的影响,应采取更加合理的管理措施和保护政策,包括调整保护区的大小、形状和用途。  相似文献   

空间分析与生物地球化学循环:西藏林周县大骨节病患病村与非患病村的比较研究     

田原  查欣洁  高星  戴尔阜  余成群 《资源与生态学报(英文版)》2020,11(2):232-246

西藏林周县是我国大骨节病(KBD)患病较为严重的地区之一,本文将林周县作为研究区,通过使用地理探测器(GeoDetector)量化分析KBD患病率风险因子的影响,并使用环境化学方法验证空间分析结果。通过对10个潜在影响因子的分析以及对当地KBD患病村和非患病村的土壤-水-粮食-人这一生物地球化学循环的环境化学分析,结果表明:(1)林周县KBD由一组多重且交互作用的环境影响因子共同作用影响,其中最重要的控制因子是地层因子;(2)所有环境介质(土壤、水、谷物)及人体组织中的硒元素浓度在KBD患病区均低于非患病区;(3)当地居民对硒和铬的摄入严重不足,尤其是KBD患病村中居民硒元素平均日摄入量(ADD)大约仅为世界卫生组织(WHO)建议的成人基本摄入量下限的4%;(4)我们推测,当地居民患病主要是由于地层这一影响因子,这是由于通过生态系统的迁移转化导致当地人口严重硒缺乏,最终导致地方性生物地球化学硒缺乏。  相似文献   

Experimental study on the shear behavior of the interface between cushion materials and the concrete raft     

Yaokun Li  Xiaolei Han  Khaled Galal  Jing Ji 《地震工程与工程振动(英文版)》2018,17(1):165-178

Cushion is a layer of granular materials between the raft and the ground. The shear behavior of the interface between the cushion and the raft may influence the seismic performance of the superstructure. In order to quantify such influences, horizontal shear tests on the interfaces between different cushion materials and concrete raft under monotonic and cyclic loading were carried out. The vertical pressure P_v, material type and cushion thickness h_c were taken as variables. Conclusions include: 1) under monotonic loading, P_v is the most significant factor; the shear resistance P_(hmax) increases as P_v increases, but the normalized factor of resistance μ_n has an opposite tendency; 2) for the materials used in this study, μ_n varies from 0.40 to 0.70, the interface friction angle δ_s varies from 20° to 35°, while u_(max) varies from 3 mm to 15 mm; 3) under cyclic loading, the interface behavior can be abstracted as a "three-segment" back-bone curve, the main parameters include μ_n, the displacement u_1 and stiffness K_1 of the elastic stage, the displacement u_2 and stiffness K_2 of the plastic stage; 4) by observation and statistical analysis, the significance of different factors, together with values of K_1, K_2 and μ_n have been obtained.  相似文献   

Structural strength deterioration of coastal bridge piers considering non-uniform corrosion in marine environments     

Anxin Guo  Wenting Yuan  Haitao Li  Hui Li 《地震工程与工程振动(英文版)》2018,17(2):429-444

In the aggressive marine environment over a long-term service period,coastal bridges inevitably sustain corrosion-induced damage due to high sea salt and humidity.This paper investigates the strength reduction of coastal bridges,especially focusing on the effects of non-uniform corrosion along the height of bridge piers.First,the corrosion initiation time and the degradation of reinforcement and concrete are analyzed for bridge piers in marine environments.To investigate the various damage modes of the concrete cover,a discretization method with fiber cells is used for calculating time-dependent interaction diagrams of cross-sections of the bridge piers at the atmospheric zone and the splash and tidal zone under a combination of axial force and bending moment.Second,the shear strength of these aging structures is analyzed.Numerical simulation indicates that the strength of a concrete pier experiences dramatic reduction from corrosion initiation to the spalling of the concrete cover.Strength loss in the splash and tidal zone is more significant than in the atmospheric zone when structures’service time is assumed to be the same.  相似文献   

Brittleness characteristics of tight oil siltstones     

Wen-Hui Tan  Jing Ba  Meng-Qiu Guo  Hui Li  Lin Zhang  Ting Yu  Hao Chen 《应用地球物理》2018,15(2):175-187

Rock brittleness directly affects reservoir fracturing and its evaluation is essential for establishing fracturing conditions prior to reservoir reforming. Dynamic and static brittleness data were collected from siltstones of the Qingshankou Formation in Songliao Basin. The brittle–plastic transition was investigated based on the stress–strain relation. The results suggest that the brittleness indices calculated by static elastic parameters are negatively correlated with the stress drop coefficient and the brittleness index B₂, defined as the average of the normalized Young’s modulus and Poisson’s ratio, is strongly correlated with the stress drop. The brittleness index B₂, Young’s modulus, and Poisson’s ratio correlate with the brittle minerals content; that is, quartz, carbonates, and pyrite. We also investigated the correlation between pore fluid and porosity and dynamic brittle characteristic based on index B₂. Pore fluid increases the plasticity of rock and reduces brittleness; moreover, with increasing porosity, rock brittleness decreases. The gas-saturated siltstone brittleness index is higher than that in oil- or water-saturated siltstone; the difference in the brittleness indices of oil- and water-saturated siltstone is very small. By comparing the rock mechanics and ultrasonic experiments, we find that the brittleness index obtained from the rock mechanics experiments is smaller than that obtained from the ultrasonic experiments; nevertheless, both decrease with increasing porosity as well as their differences. Ultrasonic waves propagate through the rock specimens without affecting them, whereas rock mechanics experiments are destructive and induce microcracking and porosity increases; consequently, the brittleness of low-porosity rocks is affected by the formation of internal microcrack systems.  相似文献   

High-P granulites of the Songshugou area (Qinling Orogen,east-central China): Petrography,phase relations,and U/Pb zircon geochronology     

Thomas Bader  Lifei Zhang  Xiaowei Li  Bin Xia  Leander Franz  Christian de Capitani  Qingyun Li 《Journal of Metamorphic Geology》2020,38(4):421-450

High-pressure (HP) granulites provide telling records of mineral reactions at upper mantle to lower crustal levels and key information on the fate of material in subduction systems. The latter especially applies when they abut eclogite and mantle dunite because such rock associations are crucial for understanding the incompletely known processes at the interface of converging plates. A continental arc, active c. 520–395 Ma ago, formed an enigmatic example of such a rock association in the Songshugou area, Qinling Orogen. To unravel the juxtaposition of the distinct rocks, this study combines petrography, phase equilibria modelling, conventional thermobarometry, and zircon U–Th–Pb–Ti–REE analysis. Two mafic HP granulites, which contain the mineral assemblages garnet–clinopyroxene–plagioclase–rutile–mesoperthite–quartz and garnet–clinopyroxene–plagioclase–rutile, experienced peak metamorphic conditions of ≤1.4 GPa, 860°C and ~1.3 GPa, ≥910°C, respectively. During decompression and cooling, at 489 ± 4 Ma, amphibole lamellae unmixed from a clinopyroxene solid solution and orthopyroxene in part replaced garnet. A felsic HP granulite shows equilibration of garnet, perthite, antiperthite, kyanite, quartz, and rutile at 810–860°C, ~1.2 GPa, sillimanite growth during decompression, and upper amphibolite facies cooling at 510 ± 4 Ma. Though the thermobarometric data are just within the methodological errors, the U/Pb zircon ages imply the HP granulites did not evolve coherently. The HP granulites either represent foundered lower arc crust or originated from subduction erosion because their geochemistry is indistinguishable from that of the hanging-wall plate. Published and new pressure–temperature–time–deformation paths converge at ~710°C, ~0.9 GPa, and ≲470 Ma, implying exhumation tectonics juxtaposed the HP granulites with a mélange of eclogite and mantle dunite at lower crustal levels. This study highlights that lower arc crust can comprise material of diverse evolution.  相似文献   

综合地球物理调查技术在江苏如东滩涂区栟茶河断裂空间展布中的应用     

李飞 《地质与勘探》2020,56(3):566-579

本文依据江苏如东滩涂区综合地球物理调查工作，对小洋口地区断裂构造空间展布进行了解译，分析了解译断裂与栟茶河断裂的关系。解译结果主要参考实测无人机航磁资料，辅以浅层地震和电磁法资料。综合两个子测区的断裂构造解译结果，同时参考华东地区航磁和重力资料，对栟茶河断裂的空间展布位置进行了推断，认为其是近EW向大型断裂，延伸距离长，同时控制测区其他断裂的展布。实测数据未发现金坛—如皋断裂在测区范围内存在的地球物理证据，分析认为其未发育至栟茶河断裂以北。  相似文献   

贵州草海湿地不同水位梯度沉积物中汞、砷形态分布及风险评价     

汤向宸  林陶  夏品华  黄先飞  马莉  杨羽 《湖泊科学》2020,32(1):100-110

通过改进Tessier连续提取法对贵州草海黑颈鹤栖息地不同水位梯度下沉积物汞(Hg)、砷(As)形态及生态风险进行了研究.结果表明,草海湿地沉积物中Hg含量在0.45～1.51-mg/kg之间,超过国家土壤环境质量农用地土壤风险管控标准;形态组成上,残渣态汞(Res-Hg)有机结合态汞(Org-Hg)碳酸盐结合态(Car-Hg)铁锰氧化态(Fe-O-Hg)可交换态(Ex-Hg),不同水位梯度下含量和赋存形态在不同区域不一致.As含量在16.4～23.8-mg/kg之间,形态依次为残渣态砷(Res-As)有机结合态砷(Org-As)铁锰氧化态砷(Fe-O-As)碳酸盐结合态砷(Car-As)可交换态砷(Ex-As).-As含量与贵州省土壤背景值持平,随着水位梯度的抬升,其总量呈增加趋势,残渣态占比逐步增多,性质逐渐稳定.采用地积累指数(I_(geo))、潜在生态风险指数(E_r~i)、风险评价编码法(RAC)对Hg、As的危害程度进行分析表明,基于草海较高Hg环境背景值,Hg整体污染风险较高,As处于低水平的污染风险等级且对环境影响较小.该研究揭示了不同水位梯度下Hg、As总量及形态分布特征,对草海湿地水位抬升恢复湿地提供了参考.  相似文献   

云南广南县老寨湾金矿地质特征及找矿标志     

高李阳  顾雄  吴小梅 《云南地质》2020,(1):71-75

广南县老寨湾金矿位于滇、黔、桂“金三角”重要成矿区带上,金矿体矿体呈似层状赋存于断层构造破碎带或层间构造破碎带中,构造控矿明显。矿体围岩均为下泥盆统坡松冲组第一段(D1ps1)硅化石英砂岩;矿床成因属中-低温热液叠加改造型金矿床,断层构造、硅化等矿化蚀变及地球化学异常是重要的找矿标志。  相似文献